SEQAFRICA Courses

Recordings and training material from these courses are Freely Available on each course page

Introduction to WGS in AMR surveillance

This course is an introduction to Whole Genome Sequencing (WGS) and its use in AMR surveillance for those who would like to know more about why it is important and how can it can be incorporated.

​Click below to read more and find resources and recordings.

WGS workflow - from isolate to analysis

​​This course is to be considered a continuation of Introduction to WGS in AMR. Here the entire workflow, from sampled isolate to finished analysis of sequencing data will be covered in lectures and hands-on exercises.

​Click to read more and find resources for participants.

Basic bioinformatics using command line

This page provides an overview of available online courses that cover basic bioinformatics and is well suited for those who would like to move from using online tools to command line tools to increase their analysis throughput.

​​Click to read more and find resources for participants.

In-person follow-up training on WGS for AMR​

This course provides hands-on experience of all the wet-lab steps required to conduct WGS using Illumina and ONT sequencing and will refresh the use of freely available online tools to analyse the output.

​Click to read more and find resources for participants.

SARS-CoV-2 - whole genome sequencing

This course is an introduction to Whole Genome Sequencing (WGS) and its use in AMR surveillance for those who would like to know more about why it is important and how can it can be incorporated.

Click to read more and find resources and recordings.

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